Co-expression analysis

Gene ID Os06g0608600
Gene name
Homology with ArabidopsisSimilar to At5g56020: - (HF=9e-3)
Module size 6 genes
NF 0.33
%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.95Os06g0608600AK061418.1-Conserved hypothetical protein9e-3At5g56020-O.I.H.G.S.X.
0.6181.20.94Os04g0600400AK072894.1-Conserved hypothetical protein6e-1At2g35470unknown proteinO.I.H.G.S.X.
0.6079.70.94Os06g0300300AK068813.1-Conserved hypothetical protein2e-3At4g26550-O.I.H.G.S.X.
0.3032.70.94Os05g0279600AK070566.1-Conserved hypothetical protein3e-9At4g30900-O.I.H.G.S.X.
0.2219.40.94Os04g0687300AK060617.1-Heat shock protein DnaJ, N-terminal domaincontaining protein7e-1At3g08000RNA-binding protein, putativeO.I.H.G.S.X.
0.116.50.94Os03g0729900BE040070-BSD protein (Fragment)2e+0At5g27930protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.399.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
25.399.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.898.5GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
9.998.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.097.8GSM174886F FR13 4 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO
8.497.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM174889H FR13 4 dpi rep 2 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO
7.097.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g56020, orthologous to the query gene, Os06g0608600

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6378.1At5g56020835700-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.6378.1At3g21610821715-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.H.G.S.X.
0.5368.6At5g64500836571membrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAPO.I.H.G.S.X.
0.5166.3At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.O.I.H.G.S.X.
0.4659.8At3g05010819662transmembrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:membrane;MPBOO.I.H.G.S.X.
0.4457.2At3g51040824268RTH (RTE1-HOMOLOG)Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.O.I.H.G.S.X.
0.4457.2At4g07390826170PQ-loop repeat family protein / transmembrane family proteinF:unknown;P:unknown;C:membrane;MPFOO.I.H.G.S.X.
0.4253.9At5g09310830790unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3643.6At5g60620836183phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPFO.I.H.G.S.X.
0.3541.6At1g68070843135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.3338.1At1g80950844435phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPFO.I.H.G.S.X.
0.3338.1At2g04900815037unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;BOMPFO.I.H.G.S.X.
0.3338.1At3g58460825015ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOPMFAVO.I.H.G.S.X.
0.3235.7At5g48810834939CB5-D (CYTOCHROME B5 ISOFORM D)Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.O.I.H.G.S.X.
0.3133.8At1g16890838260ubiquitin-conjugating enzyme, putativeUBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.O.I.H.G.S.X.
0.3032.1At1g11020837644zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVO.I.H.G.S.X.
0.3032.1At1g68100843138IAR1 (IAA-ALANINE RESISTANT 1)member of IAA-alanine resistance protein 1O.I.H.G.S.X.
0.3032.1At3g18430821372calcium-binding EF hand family proteinF:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFBO.I.H.G.S.X.
0.2930.3At5g02040831904PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPFO.I.H.G.S.X.
0.2930.3At5g51400835214unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.2930.3At4g05000825842VPS28-2F:transporter activity;P:transport;C:ESCRT I complex;MFPOO.I.H.G.S.X.
0.2930.3At1g04260839565MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.O.I.H.G.S.X.
0.2830.3At3g59950825165autophagy 4b (APG4b)F:peptidase activity;P:autophagy;C:chloroplast;MOFPO.I.H.G.S.X.
0.2726.2At2g47760819388ALG3F:alpha-1,3-mannosyltransferase activity, catalytic activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;MFOPABO.I.H.G.S.X.
0.2420.7At4g04860825823DER2.2 (DERLIN-2.2)F:unknown;P:proteolysis;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2420.7At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.2319.3At5g52240835300MSBP1 (membrane steroid binding protein 1)Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark.O.I.H.G.S.X.
0.2319.3At1g79975---O.I.H.G.S.X.
0.2319.3At5g11810831054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2217.5At2g25280817066-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFPO.I.H.G.S.X.
0.2115.8At5g51510835225unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2115.8At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage