CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0607000

Gene name
Homology with Arabidopsis Similar to At2g26600: glycosyl hydrolase family 17 protein (HF=1e-3)

Module size 6 genes

NF 0.17

%ile 14.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.93 Os06g0607000 AK121115.1 - Beta-1,3-glucanase-like protein 1e-3 At2g26600 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.38 46.9 0.93 Os08g0129700 AB099292.1 - NAD-dependent epimerase/dehydratase family protein 7e-14 At1g30620 MUR4 (MURUS 4) O.I. H.G. S.X.
0.35 41.7 0.92 Os02g0590800 AK060204.1 - Protein kinase domain containing protein 1e-12 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.27 27.5 0.93 Os02g0518100 AK103390.1 - Protein of unknown function DUF803 family protein 5e-21 At3g26670 - O.I. H.G. S.X.
0.07 3.7 0.93 Os02g0729700 AF264731.1 - Leucine zipper, homeobox-associated domaincontaining protein 4e-2 At5g66700 HB53 O.I. H.G. S.X.
0.05 2.5 0.94 Os07g0501900 AK120945.1 - Zn-finger, RING domain containing protein 4e-19 At4g28370 protein binding / zinc ion binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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