CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0597900

Gene name
Homology with Arabidopsis Similar to At5g20140: SOUL heme-binding family protein (HF=3e-6)

Module size 11 genes

NF 0.57

%ile 77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 83.8 0.94 Os06g0597900 AK065544.1 - - 3e-6 At5g20140 SOUL heme-binding family protein O.I. H.G. S.X.
0.67 87.2 0.95 Os09g0250700 AK120335.1 - ABC-1 domain containing protein 4e-19 At3g07700 ABC1 family protein O.I. H.G. S.X.
0.67 87.2 0.95 Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein O.I. H.G. S.X.
0.58 77.0 0.96 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein O.I. H.G. S.X.
0.58 77.0 0.96 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - O.I. H.G. S.X.
0.53 71.3 0.95 Os11g0603200 AK059060.1 - ABCF-type protein 1e-19 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) O.I. H.G. S.X.
0.53 71.3 0.95 Os08g0114100 AK099560.1 - Conserved hypothetical protein 4e-27 At1g64680 unknown protein O.I. H.G. S.X.
0.52 69.6 0.96 Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.52 69.6 0.95 Os03g0284600 AK110712.1 - Conserved hypothetical protein 1e-1 At2g37240 - O.I. H.G. S.X.
0.46 60.9 0.96 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - O.I. H.G. S.X.
0.45 58.8 0.95 Os04g0448600 AK068709.1 - ChaC-like protein family protein 2e-3 At1g44790 ChaC-like family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.9 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.0 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.054 1 GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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