CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0595900

Gene name
Homology with Arabidopsis Similar to At5g11430: zinc ion binding (HF=3e-2)

Module size 6 genes

NF 0.28

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.93 Os06g0595900 AK066655.1 - The start codon is not identified. 3e-2 At5g11430 zinc ion binding O.I. H.G. S.X.
0.43 55.4 0.94 Os08g0190700 9636.m00872 - Conserved hypothetical protein 3e-10 At3g20350 unknown protein O.I. H.G. S.X.
0.25 24.1 0.94 Os07g0178600 AY323488.1 - - 2e-11 At5g43840 AT-HSFA6A O.I. H.G. S.X.
0.24 22.4 0.93 Os09g0407600 9637.m02072 - DNA mismatch repair protein MutS, C-terminaldomain containing protein 4e-17 At4g02070 MSH6 (MUTS HOMOLOG 6) O.I. H.G. S.X.
0.17 12.6 0.93 Os11g0208400 AK067887.1 - Cyclin-like F-box domain containing protein 3e-1 At4g23570 SGT1A O.I. H.G. S.X.
0.15 10.3 0.93 Os09g0344700 9637.m01501 - Conserved hypothetical protein 4e+0 At4g24660 ATHB22 (HOMEOBOX PROTEIN 22) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
72.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.4 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.3 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM240999 gif1 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
7.6 97.5 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
7.4 97.5 GSM240998 gif1 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
7.2 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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