Co-expression analysis

Gene ID	Os06g0586700
Gene name
Homology with Arabidopsis	Similar to At5g01510: - (HF=6e-1)
Module size	6 genes
NF	0.08
%ile	5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	78.0	0.73	Os06g0586700	9634.m03692	-	-	6e-1	At5g01510	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	0.71	Os11g0474800	AK108710.1	-	Terpene synthase-like domain containing protein	2e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.75	Os08g0353700	AK058799.1	-	Conserved hypothetical protein	8e-2	At1g69470	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4.2	0.73	Os10g0510100	NM_197298.1	-	-	1e-1	At1g76220	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	0.71	Os01g0784500	AK109693.1	-	Receptor-like protein kinase 4	4e-6	At1g11410	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	0.76	Os03g0221200	AK068002.1	-	Homocysteine S-methyltransferase 1 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 1)(SMM:Hcy S- methyltransferase 1) (ZmHMT-1)	2e-7	At3g25900	HMT-1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
69.2	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
28.8	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.6	99.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.7	99.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4	99.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.143	1	GO:0051501	The chemical reactions and pathways involving diterpene phytoalexins, a class of diterpene formed in plants in response to fungal infection, physical damage, chemical injury, or a pathogenic process; they are sometimes referred to as plant antibiotics. Diterpenes are unsaturated hydrocarbons containing 20 carbon atoms and 4 branched methyl groups and are made up of isoprenoid units.

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28203.1.S1_at, orthologous to the query gene, Os06g0586700

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	Ta.28203.1.S1_at	At5g01510	-	-	1e+0	At1g04640	LIP2 (LIPOYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	TaAffx.3984.1.S1_at	At5g01510	-	-	7e+0	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.6487.1.A1_at	At5g01510	-	-	1e-7	At3g01890	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.6624.1.S1_a_at	At5g01510	-	-	4e-4	At2g29530	mitochondrial import inner membrane translocase (TIM10)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.3102.1.A1_at	At5g01510	-	-	2e+0	At5g67480	BT4 (BTB AND TAZ DOMAIN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.2358.3.S1_x_at	At5g01510	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.2358.3.S1_at	At5g01510	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage