Co-expression analysis

Gene ID Os06g0583400
Gene name
Homology with ArabidopsisSimilar to At4g38130: HD1 (HISTONE DEACETYLASE 1) (HF=6e-61)
Module size 6 genes
NF 0.41
%ile 49.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.95Os06g0583400AF513382.1-Histone deacetylase HDAC16e-61At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.6079.70.96Os05g0472300AK071966.1-Ribonuclease P subunit family protein7e-1At5g56760ATSERAT1O.I.H.G.S.X.
0.3338.80.96Os04g0465000AK060688.1-Sterile alpha motif SAM domain containing protein3e+0At3g48209-O.I.H.G.S.X.
0.3338.80.97Os07g0103200AU166434-Conserved hypothetical protein8e-10At4g27120unknown proteinO.I.H.G.S.X.
0.2219.40.96Os04g0531700AK119481.1-Glucose/ribitol dehydrogenase family protein4e+0At4g23430short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2219.40.96Os03g0747200AK102631.1-Conserved hypothetical protein6e-2At1g20050HYD1 (HYDRA1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.499.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.598.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0016575The modification of histones by removal of acetyl groups.Link to AmiGO
0.1051GO:0008033The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage