CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0562600

Gene name
Homology with Arabidopsis Similar to At1g24510: T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative (HF=2e-88)

Module size 6 genes

NF 0.71

%ile 93.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os06g0562600 AK067114.1 - T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36) 2e-88 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.80 94.6 0.98 Os01g0721900 AK121001.1 - Hyaluronan/mRNA binding protein family protein 3e-6 At4g16830 nuclear RNA-binding protein (RGGA) O.I. H.G. S.X.
0.77 93.1 0.98 Os04g0473400 AK067896.1 - 60S ribosomal protein L6 2e-6 At1g74050 60S ribosomal protein L6 (RPL6C) O.I. H.G. S.X.
0.73 91.1 0.98 Os08g0207000 AK058705.1 - 40S ribosomal protein S11 (S18) (YS12) (RP41) 4e-60 At3g48930 EMB1080 (embryo defective 1080) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0341100 AK121580.1 - 60S ribosomal protein L18 2e-12 At5g27850 60S ribosomal protein L18 (RPL18C) O.I. H.G. S.X.
0.42 53.9 0.98 Os02g0534800 AK101459.1 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
9.9 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1606827_at, orthologous to the query gene, Os06g0562600

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 83.2 1606827_at At1g24510 hypothetical protein LOC100264594 - 0 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.73 90.8 1610067_at At1g24510 hypothetical protein LOC100265002 - 2e-2 At1g76670 transporter-related O.I. H.G. S.X.
0.35 48.5 1614730_at At1g24510 hypothetical protein LOC100260524 - 7e-15 At1g29150 ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) O.I. H.G. S.X.
0.33 45.7 1619348_at At1g24510 - - 5e-8 At1g79975 - O.I. H.G. S.X.
0.25 30.5 1617115_at At1g24510 hypothetical protein LOC100261650 - 3e-63 At1g34130 STT3B (staurosporin and temperature sensitive 3-like b) O.I. H.G. S.X.
0.23 27.5 1613596_at At1g24510 hypothetical protein LOC100261591 - 3e-29 At1g32790 RNA-binding protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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