Co-expression analysis

Gene ID Os06g0561100
Gene name
Homology with ArabidopsisSimilar to At3g44380: - (HF=8e-1)
Module size 6 genes
NF 0.42
%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.97Os06g0561100CB622963--8e-1At3g44380-O.I.H.G.S.X.
0.5573.70.97Os01g0680600NM_192046.1--1e-1At5g23100unknown proteinO.I.H.G.S.X.
0.5573.70.97Os06g0231400AK120621.1-Protein prenyltransferase domain containingprotein2e-1At1g09410pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4458.10.97Os04g01187009632.m00192-Protein prenyltransferase domain containingprotein1e+0At3g57430pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2727.50.97Os10g01172009638.m00184--5e+0At5g51451unknown proteinO.I.H.G.S.X.
0.1813.70.97Os01g0363600NM_194015.1-Hydroxyethylthiazole kinase, monofunctional familyprotein7e+0At5g02120OHP (ONE HELIX PROTEIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.598.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.497.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.497.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.596.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.596.3GSM159271Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
4.396.1GSM431925Root- +Fe+P biological rep1GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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