CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0560900

Gene name
Homology with Arabidopsis Similar to At4g09660: - (HF=8e-2)

Module size 10 genes

NF 0.67

%ile 90.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 0.98 Os06g0560900 9634.m03471 - - 8e-2 At4g09660 - O.I. H.G. S.X.
0.78 93.4 0.99 Os09g0261400 AK105353.1 - - 3e-1 At1g51080 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os05g0236600 9633.m01287 - - 6e-2 At4g19090 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os09g0341300 9637.m01455 - - 2e+0 At3g50260 CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1) O.I. H.G. S.X.
0.67 87.2 0.99 Os03g0594000 NM_184833.1 - - 2e+0 At4g37530 peroxidase, putative O.I. H.G. S.X.
0.64 83.4 0.99 Os07g0583300 9635.m03933 - - 7e-1 At3g26960 unknown protein O.I. H.G. S.X.
0.64 83.4 0.99 Os02g0463100 9630.m02493 - - 5e-3 At4g09660 - O.I. H.G. S.X.
0.62 81.5 0.98 Os11g0472800 9639.m02553 - - 3e+0 At5g27840 TOPP8 O.I. H.G. S.X.
0.56 76.3 0.98 Os10g0378025 NM_196167.1 - - 4e+0 At5g50915 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.52 69.6 0.99 Os02g0188900 9630.m00874 - Cyclin-like F-box domain containing protein 6e-1 At3g48920 AtMYB45 (myb domain protein 45) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.3 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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