CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0531900

Gene name
Homology with Arabidopsis Similar to At3g16100: ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) (HF=8e-1)

Module size 6 genes

NF 0.44

%ile 55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.90 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) O.I. H.G. S.X.
0.73 91.1 0.92 Os05g0140100 AK111821.1 - Myb, DNA-binding domain containing protein 1e-10 At1g57560 AtMYB50 (myb domain protein 50) O.I. H.G. S.X.
0.43 55.4 0.90 Os11g0448700 AK068659.1 - Hypothetical protein 9e-2 At3g42310 unknown protein O.I. H.G. S.X.
0.35 41.7 0.88 Os03g0323900 AK108122.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 1e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.32 36.3 0.90 Os04g0505200 AK066703.1 - Leucine-rich repeat, plant specific containingprotein 1e-7 At1g01910 anion-transporting ATPase, putative O.I. H.G. S.X.
0.26 25.6 0.89 Os03g0817800 AK065071.1 - Protein of unknown function DUF231 domaincontaining protein 2e-3 At1g78710 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.3 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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