CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0531600

Gene name
Homology with Arabidopsis Similar to At5g59000: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1)

Module size 12 genes

NF 0.28

%ile 28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 77.0 0.88 Os06g0531600 AK059898.1 - Lipolytic enzyme, G-D-S-L family protein 2e-1 At5g59000 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.42 53.9 0.93 Os06g0655100 CF308917 - D-3-phosphoglycerate dehydrogenase family protein 2e-2 At2g25830 YebC-related O.I. H.G. S.X.
0.36 44.0 0.92 Os05g0544900 AK109267.1 - Hypothetical protein 5e-1 At4g23770 unknown protein O.I. H.G. S.X.
0.33 38.8 0.94 Os06g0214900 AK064752.1 - Pyridine nucleotide-disulphide oxidoreductase,class I family protein 3e-13 At5g08740 NDC1 (NAD(P)H dehydrogenase C1) O.I. H.G. S.X.
0.33 38.8 0.94 Os07g0172600 9635.m00711 - TPR-like domain containing protein 1e+0 At3g56550 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.30 32.7 0.94 Os07g0490400 AK067941.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 2e-3 At3g60370 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.30 32.7 0.92 Os02g0199300 AK064726.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 2e-6 At4g26555 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.27 27.5 0.94 Os07g0567400 AK068245.1 - - 1e-4 At5g45040 cytochrome c6 (ATC6) O.I. H.G. S.X.
0.25 24.1 0.95 Os06g0246101 CB644318 - - 2e+0 At1g03650 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.23 21.2 0.94 Os02g0566000 AK059295.1 - Conserved hypothetical protein 4e+0 At5g64900 PROPEP1 O.I. H.G. S.X.
0.21 17.9 0.95 Os03g0309800 AK106141.1 - PPR2 4e-15 At3g06430 EMB2750 (embryo defective 2750) O.I. H.G. S.X.
0.09 4.9 0.91 Os02g0711200 AK106470.1 - Hypothetical protein 6e-11 At1g26090 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 2 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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