Co-expression analysis

Gene ID Os06g0528600
Gene name
Homology with ArabidopsisSimilar to At5g53120: SPDS3 (SPERMIDINE SYNTHASE 3) (HF=1e-8)
Module size 17 genes
NF 0.27
%ile 27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.92Os06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.4964.40.93Os08g0484500AK070359.1-Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1)4e-37At1g224102-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeO.I.H.G.S.X.
0.4253.90.93Os06g0646600CB659494-KNOX family class 2 homeodomain protein3e-14At4g32040KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)O.I.H.G.S.X.
0.3236.30.93Os03g0823100AK103844.1-Sugar transporter-like protein8e-26At5g59250sugar transporter family proteinO.I.H.G.S.X.
0.3134.50.93Os04g0488600AK060198.1-Protein of unknown function DUF565 family protein1e-11At5g43050unknown proteinO.I.H.G.S.X.
0.2831.10.93Os05g0530300CB624319-Conserved hypothetical protein6e+0At5g5671060S ribosomal protein L31 (RPL31C)O.I.H.G.S.X.
0.2422.40.94Os12g0276100AK062912.1-Hypothetical protein2e+0At3g17830DNAJ heat shock family proteinO.I.H.G.S.X.
0.2422.40.94Os01g0895100AK067698.1-Membrane-associated 30 kDa protein, chloroplastprecursor (M30)4e-27At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)O.I.H.G.S.X.
0.2321.20.93Os02g0649700AK069509.1-Peptidase M41, FtsH extracellular domaincontaining protein6e-34At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.
0.2219.40.94Os02g0768600AK059725.1--2e-68At5g09650AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)O.I.H.G.S.X.
0.2219.40.94Os01g0239200BX900663-Triose phosphate/phosphate translocator3e-25At5g46110APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)O.I.H.G.S.X.
0.2016.50.96Os08g0526300AK070382.1-Conserved hypothetical protein3e-12At4g11960PGRL1B (PGR5-Like B)O.I.H.G.S.X.
0.2016.50.93Os01g0662600AK119723.1-ISCU11e-4At3g01020ISU2 (ISCU-LIKE 2)O.I.H.G.S.X.
0.1915.10.96Os05g0110100AK121142.1-Conserved hypothetical protein4e-1At2g40970myb family transcription factorO.I.H.G.S.X.
0.1813.70.96Os11g0456100AK099562.1-Protein of unknown function DUF760 family protein2e-1At4g13310CYP71A20O.I.H.G.S.X.
0.1712.60.96Os07g0558500AK064914.1-Inositol phosphatase-like protein1e-2At2g20890PSB29O.I.H.G.S.X.
0.138.20.96Os03g0117100AK070213.1-Peroxisomal biogenesis factor 11 family protein4e-2At2g45740PEX11DO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.199.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.997.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.497.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0831GO:0030163The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.Link to AmiGO
0.0771GO:0009073The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage