CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0528000

Gene name
Homology with Arabidopsis Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)

Module size 6 genes

NF 0.72

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os06g0528000 NM_196265.1 - - 1e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.
0.83 95.8 0.98 Os07g0456000 9635.m02632 - - 1e+0 At4g27150 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 O.I. H.G. S.X.
0.61 81.2 0.98 Os09g0259366 9637.m00619 - - 6e+0 At5g60400 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os01g0593100 NM_192598.1 - Hypothetical protein 2e+0 At1g43330 myb family protein-related O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0566900 NM_184753.1 - - 1e+0 At3g11600 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0439750 9633.m03398 - - 1e-2 At2g41380 embryo-abundant protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	93.1	0.98	Os06g0528000	NM_196265.1	-	-	1e+0	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os07g0456000	9635.m02632	-	-	1e+0	At4g27150	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os09g0259366	9637.m00619	-	-	6e+0	At5g60400	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os01g0593100	NM_192598.1	-	Hypothetical protein	2e+0	At1g43330	myb family protein-related	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os03g0566900	NM_184753.1	-	-	1e+0	At3g11600	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os05g0439750	9633.m03398	-	-	1e-2	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os03g0256500	9631.m01458	-	Conserved hypothetical protein	9e+0	Atmg01060	-	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os06g0500500	9634.m02933	-	-	2e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os08g0479900	9636.m03757	-	-	3e+0	At5g58710	ROC7	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os08g0295201	9636.m01953	-	-	3e+0	At1g24577	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os03g0622400	9631.m04085	-	Conserved hypothetical protein	4e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.
0.48	63.7	0.95	Os06g0280100	9634.m01692	-	-	1e+1	At5g01881	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os06g0541000	9634.m03301	-	-	3e-1	At5g52840	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os02g0740800	AK111460.1	-	Hypothetical protein	2e-4	At1g24130	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os11g0662900	9639.m04087	-	-	2e+0	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os10g0350000	9638.m01736	-	-	2e+0	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os06g0538501	9634.m03282	-	-	4e+0	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os03g0586000	9631.m03736	-	-	2e+0	At5g53905	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os01g0964600	9629.m07268	-	-	8e-1	At5g66815	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.97	Os01g0536500	9629.m03315	-	Conserved hypothetical protein	6e-1	At1g07680	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os09g0499500	9637.m02835	-	Conserved hypothetical protein	2e-2	At3g24780	-	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os11g0164400	9639.m00578	-	-	7e-1	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os03g0638100	9631.m04211	-	-	3e+0	At2g22470	AGP2 (ARABINOGALACTAN PROTEIN 2)	O.I.	H.G.	S.X.
0.32	36.3	0.97	Os11g0268100	9639.m01528	-	-	3e+0	At5g46690	bHLH071 (beta HLH protein 71)	O.I.	H.G.	S.X.
0.32	36.3	0.97	Os05g0343100	9633.m02519	-	-	1e+0	At4g39360	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os01g0272700	9629.m01655	-	-	1e+0	At5g27440	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os10g0185042	9638.m00932	-	-	6e-1	At3g58120	BZIP61	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os06g0275750	NM_185804.1	-	-	1e-1	At2g27580	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os04g0314700	9632.m02329	-	-	2e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os06g0365400	9634.m02577	-	-	3e+0	At3g32160	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os06g0546950	9634.m03354	-	-	1e-5	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.
0.28	31.1	0.98	Os06g0577600	9634.m03612	-	-	3e+0	At2g29995	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os04g0377100	9632.m02925	-	-	5e-1	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os08g0404700	9636.m03122	-	-	3e-2	At3g15040	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os08g0475500	9636.m03723	-	Conserved hypothetical protein	6e-1	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.
0.26	25.6	0.97	Os08g0173500	9636.m00709	-	-	8e-1	At5g04470	SIM (SIAMESE)	O.I.	H.G.	S.X.
0.26	25.6	0.97	Os09g0562150	9637.m03314	-	-	1e-1	At5g59530	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os07g0670000	AK109518.1	-	TPR-like domain containing protein	4e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os06g0551900	9634.m03395	-	-	5e-1	At1g48610	AT hook motif-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os02g0772700	9630.m05268	-	-	3e-1	At1g32290	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os02g0483700	9630.m02683	-	-	1e+0	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os05g0482100	9633.m03765	-	-	1e-3	At2g29590	thioesterase family protein	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os04g0426800	9632.m03343	-	-	1e+0	At4g23950	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
13.5 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
59.7	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
37.3	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.5	98.9	GSM302916	endo6D_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
13.5	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.0	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os06g0528000
Gene name
Homology with Arabidopsis	Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)
Module size	6 genes
NF	0.72
%ile	94.3

Co-expression analysis

Gene ID Os06g0528000 Gene name Homology with ArabidopsisSimilar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0) Module size 6 genes NF 0.72 %ile 94.3

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0528000

Gene name
Homology with Arabidopsis Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)

Module size 6 genes

NF 0.72

%ile 94.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays