Co-expression analysis

Gene ID	Os06g0528000
Gene name
Homology with Arabidopsis	Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)
Module size	6 genes
NF	0.72
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	93.1	0.98	Os06g0528000	NM_196265.1	-	-	1e+0	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	0.98	Os07g0456000	9635.m02632	-	-	1e+0	At4g27150	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.98	Os09g0259366	9637.m00619	-	-	6e+0	At5g60400	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.98	Os01g0593100	NM_192598.1	-	Hypothetical protein	2e+0	At1g43330	myb family protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.98	Os03g0566900	NM_184753.1	-	-	1e+0	At3g11600	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.98	Os05g0439750	9633.m03398	-	-	1e-2	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
59.7	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
37.3	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.5	98.9	GSM302916	endo6D_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
13.5	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.0	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1607128_at, orthologous to the query gene, Os06g0528000

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1607128_at	At5g52570	hypothetical protein LOC100249973	-	8e-2	At1g79780	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	1613569_at	At5g52570	hypothetical protein LOC100241131	-	9e-2	At1g15440	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612821_at	At5g52570	hypothetical protein LOC100249429	-	2e-1	At5g27540	MIRO1 (Miro-related GTP-ase 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620699_at	At5g52570	hypothetical protein LOC100241979	-	1e+0	Atmg00960	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	1610663_at	At5g52570	hypothetical protein LOC100260286	-	0	At5g19770	TUA3	O.I.	H.G.	S.X.	Please select
0.35	48.5	1621518_at	At5g52570	hypothetical protein LOC100250245	-	2e-23	At1g80670	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1607065_at	At5g52570	hypothetical protein LOC100259903	-	4e-22	At1g42440	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620159_at	At5g52570	-	-	3e-5	At2g44710	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1621324_at	At5g52570	-	-	1e-1	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please select
0.29	37.7	1606831_at	At5g52570	hypothetical protein LOC100260960	-	2e-112	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1607686_s_at	At5g52570	similar to 60S ribosomal protein L29	-	7e-10	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1617878_at	At5g52570	hypothetical protein LOC100258943	-	3e-85	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.28	37.7	1622521_at	At5g52570	-	-	5e-15	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1618330_at	At5g52570	hypothetical protein LOC100252030	-	5e-9	At1g15480	DNA binding	O.I.	H.G.	S.X.	Please select
0.27	34.0	1620700_at	At5g52570	hypothetical protein LOC100261522	-	4e-20	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.27	34.0	1610866_a_at	At5g52570	hypothetical protein LOC100247183	-	1e-6	At1g22300	GRF10 (GENERAL REGULATORY FACTOR 10)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1608749_at	At5g52570	hypothetical protein LOC100241808	-	5e-10	At1g21170	SEC5B	O.I.	H.G.	S.X.	Please select
0.24	28.7	1616036_at	At5g52570	hypothetical protein LOC100241363	-	7e-4	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1620346_at	At5g52570	hypothetical protein LOC100257815	-	2e-9	At1g65540	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1613996_at	At5g52570	hypothetical protein LOC100248626	-	6e-1	At4g34470	ASK12 (ARABIDOPSIS SKP1-LIKE 12)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1614001_s_at	At5g52570	hypothetical protein LOC100260862	-	2e-41	At3g22290	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1607998_at	At5g52570	hypothetical protein LOC100245820	-	4e-24	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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