CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0528000

Gene name
Homology with Arabidopsis Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)

Module size 6 genes

NF 0.72

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os06g0528000 NM_196265.1 - - 1e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.
0.83 95.8 0.98 Os07g0456000 9635.m02632 - - 1e+0 At4g27150 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 O.I. H.G. S.X.
0.61 81.2 0.98 Os09g0259366 9637.m00619 - - 6e+0 At5g60400 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os01g0593100 NM_192598.1 - Hypothetical protein 2e+0 At1g43330 myb family protein-related O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0566900 NM_184753.1 - - 1e+0 At3g11600 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0439750 9633.m03398 - - 1e-2 At2g41380 embryo-abundant protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
13.5 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig13376_at, orthologous to the query gene, Os06g0528000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 80.3 Contig13376_at At5g52570 - - 5e-5 At4g33500 protein phosphatase 2C-related / PP2C-related O.I. H.G. S.X.
0.62 79.1 Contig3898_at At5g52570 - - 1e-7 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) O.I. H.G. S.X.
0.45 59.3 Contig1737_at At5g52570 - - 6e-3 At1g55020 LOX1 O.I. H.G. S.X.
0.44 58.9 Contig22324_at At5g52570 - - 3e-1 At1g31812 ACBP6 (acyl-CoA-binding protein 6) O.I. H.G. S.X.
0.40 53.1 Contig17737_at At5g52570 - - 2e+0 At3g51636 unknown protein O.I. H.G. S.X.
0.39 50.5 rbah55a21_s_at At5g52570 - - 4e+0 At5g26840 unknown protein O.I. H.G. S.X.
0.38 49.5 Contig9242_at At5g52570 - - 4e-18 At3g06430 EMB2750 (embryo defective 2750) O.I. H.G. S.X.
0.30 37.0 Contig15658_at At5g52570 - - 1e+0 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) O.I. H.G. S.X.
0.28 35.5 HVSMEf0001F23r2_x_at At5g52570 - - 9e+0 At4g26030 transcription factor O.I. H.G. S.X.
0.22 24.2 Contig22285_at At5g52570 - - 6e-16 At2g04842 EMB2761 (EMBRYO DEFECTIVE 2761) O.I. H.G. S.X.
0.20 21.1 Contig9243_at At5g52570 - - 2e-4 At4g27470 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.14 12.9 Contig7391_at At5g52570 - - 2e-25 At5g42000 ORMDL family protein O.I. H.G. S.X.
0.13 11.6 Contig3970_at At5g52570 - - 2e-3 At3g55460 SCL30 O.I. H.G. S.X.
0.11 9.4 Contig9169_at At5g52570 - - 9e-30 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.11 9.4 Contig13620_at At5g52570 - - 8e+0 At5g05770 WOX7 (WUSCHEL-RELATED HOMEOBOX 7) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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