CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0528000

Gene name
Homology with Arabidopsis Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)

Module size 6 genes

NF 0.72

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os06g0528000 NM_196265.1 - - 1e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.
0.83 95.8 0.98 Os07g0456000 9635.m02632 - - 1e+0 At4g27150 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 O.I. H.G. S.X.
0.61 81.2 0.98 Os09g0259366 9637.m00619 - - 6e+0 At5g60400 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os01g0593100 NM_192598.1 - Hypothetical protein 2e+0 At1g43330 myb family protein-related O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0566900 NM_184753.1 - - 1e+0 At3g11600 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0439750 9633.m03398 - - 1e-2 At2g41380 embryo-abundant protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	93.1	0.98	Os06g0528000	NM_196265.1	-	-	1e+0	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os07g0456000	9635.m02632	-	-	1e+0	At4g27150	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os09g0259366	9637.m00619	-	-	6e+0	At5g60400	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os01g0593100	NM_192598.1	-	Hypothetical protein	2e+0	At1g43330	myb family protein-related	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os03g0566900	NM_184753.1	-	-	1e+0	At3g11600	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os05g0439750	9633.m03398	-	-	1e-2	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
13.5 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
59.7	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
37.3	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.5	98.9	GSM302916	endo6D_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
13.5	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.0	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.18922.1.S1_at, orthologous to the query gene, Os06g0528000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 88.1 HgAffx.18922.1.S1_at At5g52570 - - 6e-1 At3g16175 thioesterase family protein O.I. H.G. S.X.
0.60 80.7 HgAffx.16208.1.S1_at At5g52570 - - 5e+0 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.49 68.3 PsAffx.C162000008_at At5g52570 - - 8e-2 At5g08160 ATPK3 O.I. H.G. S.X.
0.49 68.3 PsAffx.psHB004xH08f_at At5g52570 - - 5e+0 At3g61840 unknown protein O.I. H.G. S.X.
0.47 66.6 HgAffx.8265.1.S1_at At5g52570 - - 5e+0 At5g16010 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein O.I. H.G. S.X.
0.46 65.5 PsAffx.psMA010xD09f_at At5g52570 - - 1e+0 At1g07985 Expressed protein O.I. H.G. S.X.
0.46 65.5 PsAffx.C123000031_at At5g52570 - - 2e+0 At4g22930 PYR4 (PYRIMIDIN 4) O.I. H.G. S.X.
0.44 63.3 HgAffx.11255.1.S1_at At5g52570 - - 5e+0 At3g09050 unknown protein O.I. H.G. S.X.
0.42 59.3 PsAffx.C34000064_at At5g52570 - - 2e+0 At5g29560 calcium ion binding O.I. H.G. S.X.
0.39 54.5 PsAffx.C122000010_at At5g52570 - - 6e-1 At4g16240 unknown protein O.I. H.G. S.X.
0.34 47.2 PsAffx.CL1693Contig1_at At5g52570 - - 6e+0 At5g20190 binding O.I. H.G. S.X.
0.33 46.1 GmaAffx.14280.1.S1_at At5g52570 - - 1e-8 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) O.I. H.G. S.X.
0.32 43.7 HgAffx.15698.1.S1_at At5g52570 - - 4e+0 At2g26670 TED4 (REVERSAL OF THE DET PHENOTYPE 4) O.I. H.G. S.X.
0.26 33.9 HgAffx.3203.1.A1_at At5g52570 - - 3e+0 At5g23760 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.24 30.9 GmaAffx.1910.1.S1_at At5g52570 - - 2e-1 At5g25980 TGG2 (GLUCOSIDE GLUCOHYDROLASE 2) O.I. H.G. S.X.
0.24 30.9 GmaAffx.15790.1.A1_at At5g52570 - - 2e+0 At1g70790 C2 domain-containing protein O.I. H.G. S.X.
0.21 26.6 HgAffx.14720.1.A1_at At5g52570 - - 2e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.21 26.6 GmaAffx.14602.1.S1_at At5g52570 - - 2e-1 At3g45851 unknown protein O.I. H.G. S.X.
0.20 25.1 PsAffx.C326000007_at At5g52570 - - 3e+0 Atmg01090 - O.I. H.G. S.X.
0.14 17.5 HgAffx.3224.1.S1_at At5g52570 - - 7e+0 At2g35760 integral membrane family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.72	88.1	HgAffx.18922.1.S1_at	At5g52570	-	-	6e-1	At3g16175	thioesterase family protein	O.I.	H.G.	S.X.
0.60	80.7	HgAffx.16208.1.S1_at	At5g52570	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.49	68.3	PsAffx.C162000008_at	At5g52570	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.
0.49	68.3	PsAffx.psHB004xH08f_at	At5g52570	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.
0.47	66.6	HgAffx.8265.1.S1_at	At5g52570	-	-	5e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	O.I.	H.G.	S.X.
0.46	65.5	PsAffx.psMA010xD09f_at	At5g52570	-	-	1e+0	At1g07985	Expressed protein	O.I.	H.G.	S.X.
0.46	65.5	PsAffx.C123000031_at	At5g52570	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.
0.44	63.3	HgAffx.11255.1.S1_at	At5g52570	-	-	5e+0	At3g09050	unknown protein	O.I.	H.G.	S.X.
0.42	59.3	PsAffx.C34000064_at	At5g52570	-	-	2e+0	At5g29560	calcium ion binding	O.I.	H.G.	S.X.
0.39	54.5	PsAffx.C122000010_at	At5g52570	-	-	6e-1	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.34	47.2	PsAffx.CL1693Contig1_at	At5g52570	-	-	6e+0	At5g20190	binding	O.I.	H.G.	S.X.
0.33	46.1	GmaAffx.14280.1.S1_at	At5g52570	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.
0.32	43.7	HgAffx.15698.1.S1_at	At5g52570	-	-	4e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.
0.26	33.9	HgAffx.3203.1.A1_at	At5g52570	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.24	30.9	GmaAffx.1910.1.S1_at	At5g52570	-	-	2e-1	At5g25980	TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)	O.I.	H.G.	S.X.
0.24	30.9	GmaAffx.15790.1.A1_at	At5g52570	-	-	2e+0	At1g70790	C2 domain-containing protein	O.I.	H.G.	S.X.
0.21	26.6	HgAffx.14720.1.A1_at	At5g52570	-	-	2e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.
0.21	26.6	GmaAffx.14602.1.S1_at	At5g52570	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.
0.20	25.1	PsAffx.C326000007_at	At5g52570	-	-	3e+0	Atmg01090	-	O.I.	H.G.	S.X.
0.14	17.5	HgAffx.3224.1.S1_at	At5g52570	-	-	7e+0	At2g35760	integral membrane family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os06g0528000
Gene name
Homology with Arabidopsis	Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)
Module size	6 genes
NF	0.72
%ile	94.3

Co-expression analysis

Gene ID Os06g0528000 Gene name Homology with ArabidopsisSimilar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0) Module size 6 genes NF 0.72 %ile 94.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0528000

Gene name
Homology with Arabidopsis Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)

Module size 6 genes

NF 0.72

%ile 94.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays