CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0528000

Gene name
Homology with Arabidopsis Similar to At5g52570: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) (HF=1e+0)

Module size 6 genes

NF 0.72

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.98 Os06g0528000 NM_196265.1 - - 1e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.
0.83 95.8 0.98 Os07g0456000 9635.m02632 - - 1e+0 At4g27150 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 O.I. H.G. S.X.
0.61 81.2 0.98 Os09g0259366 9637.m00619 - - 6e+0 At5g60400 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os01g0593100 NM_192598.1 - Hypothetical protein 2e+0 At1g43330 myb family protein-related O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0566900 NM_184753.1 - - 1e+0 At3g11600 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0439750 9633.m03398 - - 1e-2 At2g41380 embryo-abundant protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
13.5 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g25210, orthologous to the query gene, Os06g0528000

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At5g25210 832592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 At1g05805 837090 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cytosol;PMOFBA O.I. H.G. S.X.
0.32 35.7 At3g47160 823869 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF O.I. H.G. S.X.
0.29 30.3 At3g19553 821492 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:amino acid transport, transport;C:membrane;BMOFPA O.I. H.G. S.X.
0.29 30.3 At3g50700 824234 AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2) zinc finger protein, similar to maize Indeterminate1 (ID1) O.I. H.G. S.X.
0.25 22.6 At5g03470 831828 ATB' ALPHA Encodes B' regulatory subunit of PP2A (AtB'alpha), putative size of 57 kDa. O.I. H.G. S.X.
0.12 4.9 At3g50500 824214 SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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