Co-expression analysis

Gene ID Os06g0494400
Gene name
Homology with ArabidopsisSimilar to At5g52450: MATE efflux protein-related (HF=1e-3)
Module size 16 genes
NF 0.28
%ile 28.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.84Os06g0494400AK067594.1-Multi antimicrobial extrusion protein MatE familyprotein1e-3At5g52450MATE efflux protein-relatedO.I.H.G.S.X.
0.5068.00.87Os01g0551000AK071219.1-Conserved hypothetical protein3e+0At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.4863.70.88Os01g0965900AK108889.1-Conserved hypothetical protein1e-7At5g04830unknown proteinO.I.H.G.S.X.
0.4355.40.92Os04g0613300AK065653.1-Conserved hypothetical protein2e-10At1g16320unknown proteinO.I.H.G.S.X.
0.3644.00.91Os10g0206500CF294964-Conserved hypothetical protein4e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.3134.50.89Os01g0227400AK108512.1-Cytochrome P450 71A1 (EC 1.14.-.-) (CYPLXXIA1)(ARP-2)1e+0At5g47080CKB1O.I.H.G.S.X.
0.3134.50.91Os02g0498300AK070515.1-Protein of unknown function DUF803 family protein8e-7At3g23870permease-relatedO.I.H.G.S.X.
0.2831.10.89Os01g0362100AK065319.1-Esterase/lipase/thioesterase domain containingprotein3e-4At1g54570esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2321.20.88Os08g0562800AK103815.1-Multi antimicrobial extrusion protein MatE familyprotein4e-6At4g25640MATE efflux family proteinO.I.H.G.S.X.
0.2321.20.91Os05g0574700AK108682.1-Conserved hypothetical protein3e+0At3g44210unknown proteinO.I.H.G.S.X.
0.2117.90.90Os02g0675800AK100726.1-Cyclin-like F-box domain containing protein4e-3At3g61060AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)O.I.H.G.S.X.
0.2117.90.91Os08g05213009636.m04154-Conserved hypothetical protein2e-1At3g20557unknown proteinO.I.H.G.S.X.
0.1712.60.90Os03g0795000AK066562.1-Biopterin transport-related protein BT1 familyprotein1e-9At2g32040integral membrane transporter family proteinO.I.H.G.S.X.
0.1510.30.90Os01g0837800AK064840.1-Cation diffusion facilitator 87e-20At2g39450MTP11O.I.H.G.S.X.
0.149.30.92Os08g0457600AK065020.1-RSH28e-24At3g14050RSH2 (RELA-SPOT HOMOLOG 2)O.I.H.G.S.X.
0.149.30.90Os01g0926800U88068.1-Cellular retinaldehyde-binding/triple function,N-terminal domain containing protein4e-2At1g20696HMGB3 (HIGH MOBILITY GROUP B 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.199.5GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
15.798.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.197.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.497.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.097.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0951GO:0015969The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.Link to AmiGO
0.0591GO:0006855The directed movement of drugs across a membrane into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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