Co-expression analysis

Gene ID	Os06g0493100
Gene name
Homology with Arabidopsis	Similar to At5g38950: germin-like protein-related (HF=1e+0)
Module size	6 genes
NF	0.79
%ile	98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	0.72	Os06g0493100	AY256682.1	-	Hypothetical protein	1e+0	At5g38950	germin-like protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	0.77	Os01g0940800	AK068247.1	-	Beta-1,3-glucanase precursor	1e-5	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.82	Os10g0569400	AK062449.1	-	RIR1a protein precursor	3e-1	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.82	Os06g0591200	AK062563.1	-	Conserved hypothetical protein	1e-1	At1g60950	FED A	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	0.81	Os10g0569600	BQ529575	-	RIR1b protein precursor	1e+0	At2g25344	LCR14 (Low-molecular-weight cysteine-rich 14)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	0.77	Os03g0762400	AK071181.1	-	Peroxidase precursor (EC 1.11.1.7)	1e-5	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.6	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.4	98.7	GSM262021	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.4	98.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.0	98.0	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM375648	Taichung 65_shoot_replicate 2	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
9.6	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM375647	Taichung 65_shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
9.0	97.8	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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