CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0486000

Gene name
Homology with Arabidopsis Similar to At1g23540: protein kinase family protein (HF=5e-3)

Module size 6 genes

NF 0.15

%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os06g0486000 AK100169.1 - Protein kinase domain containing protein 5e-3 At1g23540 protein kinase family protein O.I. H.G. S.X.
0.67 87.2 0.99 Os07g0257100 9635.m01529 - - 3e+0 At2g43870 polygalacturonase, putative / pectinase, putative O.I. H.G. S.X.
0.29 31.1 0.99 Os05g0455001 9633.m03527 - - 2e+0 At5g60350 unknown protein O.I. H.G. S.X.
0.26 25.6 0.99 Os03g0694600 AK110834.1 - Hypothetical protein 3e+0 At5g38750 asparaginyl-tRNA synthetase family O.I. H.G. S.X.
0.15 10.3 0.99 Os05g0312200 9633.m02206 - - 2e-1 At3g28200 peroxidase, putative O.I. H.G. S.X.
0.04 2.0 0.98 Os10g0167800 NM_195037.1 - - 6e-1 At2g14835 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.5 99.0 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
15.1 98.6 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.9 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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