CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0481400

Gene name
Homology with Arabidopsis Similar to At5g14650: polygalacturonase, putative / pectinase, putative (HF=6e-1)

Module size 6 genes

NF 0.41

%ile 50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.84 Os06g0481400 9634.m02742 - - 6e-1 At5g14650 polygalacturonase, putative / pectinase, putative O.I. H.G. S.X.
0.73 91.1 0.86 Os02g0667500 AK059662.1 - Hypothetical protein 3e+0 At5g28630 glycine-rich protein O.I. H.G. S.X.
0.50 68.0 0.89 Os05g0593900 AK058553.1 - C13 endopeptidase NP1 precursor 5e-2 At3g20210 DELTA-VPE O.I. H.G. S.X.
0.33 38.8 0.86 Os07g0642200 AK058442.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g28590 lipase, putative O.I. H.G. S.X.
0.27 27.5 0.86 Os03g0729600 AK063169.1 - Conserved hypothetical protein 8e-3 At5g22880 HTB2 O.I. H.G. S.X.
0.21 17.9 0.87 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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