Co-expression analysis

Gene ID Os06g0476000
Gene name
Homology with ArabidopsisSimilar to At3g17090: protein phosphatase 2C family protein / PP2C family protein (HF=3e+0)
Module size 6 genes
NF 0.60
%ile 82.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.99Os06g04760009634.m02689--3e+0At3g17090protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.7793.10.99Os10g0571900NM_197841.1-RmlC-like cupin family protein3e+0At2g13980nucleic acid bindingO.I.H.G.S.X.
0.7391.10.99Os07g06908009635.m04962--3e-1At1g47380protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.
0.5068.00.99Os02g0590700AK100917.1-Conserved hypothetical protein4e-2At3g20860ATNEK5 (NIMA-RELATED KINASE5)O.I.H.G.S.X.
0.5068.00.99Os02g0598600AK105564.1-Cyclin-like F-box domain containing protein6e-1At4g01600GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.4355.40.99Os08g05279009636.m04228-Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein3e-1At3g49540unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.899.2GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.899.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.698.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.598.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.298.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.798.7GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.798.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.498.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.398.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.398.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0381GO:0006511The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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