CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0361700

Gene name
Homology with Arabidopsis Similar to At1g56530: hydroxyproline-rich glycoprotein family protein (HF=2e-1)

Module size 25 genes

NF 0.35

%ile 39.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.89 Os06g0361700 9634.m02538 - - 2e-1 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.49 64.4 0.94 Os11g0664100 9639.m04092 - Protein kinase domain containing protein 3e-1 At4g02235 AGL51 O.I. H.G. S.X.
0.48 63.7 0.92 Os04g0248300 9632.m01585 - - 3e+0 At1g02740 chromatin binding O.I. H.G. S.X.
0.48 63.7 0.93 Os07g0651000 9635.m04586 - - 1e+0 At2g12875 unknown protein O.I. H.G. S.X.
0.46 60.9 0.95 Os10g0451500 9638.m02710 - - 5e-4 At1g62240 unknown protein O.I. H.G. S.X.
0.46 60.9 0.96 Os09g0385800 9637.m01877 - Conserved hypothetical protein 4e-1 At5g51110 4-alpha-hydroxytetrahydrobiopterin dehydratase O.I. H.G. S.X.
0.39 48.3 0.92 Os10g0454000 AK106252.1 - - 1e-5 At1g19300 PARVUS (PARVUS) O.I. H.G. S.X.
0.38 46.9 0.95 Os04g0298400 9632.m02152 - - 7e-2 At2g23120 - O.I. H.G. S.X.
0.38 46.9 0.94 Os08g0370000 9636.m02796 - - 2e-1 At5g54410 unknown protein O.I. H.G. S.X.
0.37 45.0 0.91 Os10g0364200 NM_196057.1 - - 8e-1 At3g56970 BHLH038 O.I. H.G. S.X.
0.35 41.7 0.96 Os07g0275600 9635.m01751 - - 2e+1 At5g65390 AGP7 O.I. H.G. S.X.
0.35 41.7 0.93 Os08g0205500 9636.m01009 - - 3e-1 At1g73560 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.31 34.5 0.97 Os09g0517900 BM038469 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e+1 At3g54770 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.31 34.5 0.95 Os10g0535101 NM_188873.1 - - 5e+0 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.30 32.7 0.96 Os07g0131800 NM_186229.1 - - 8e-3 At4g10970 unknown protein O.I. H.G. S.X.
0.29 31.1 0.90 Os04g0290100 9632.m02057 - - 2e+0 At5g16870 aminoacyl-tRNA hydrolase O.I. H.G. S.X.
0.29 31.1 0.92 Os09g0373600 9637.m01774 - - 3e-1 At5g57150 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.28 31.1 0.92 Os03g0605666 9631.m03929 - - 5e-1 At1g35181 unknown protein O.I. H.G. S.X.
0.27 27.5 0.91 Os02g0586701 9631.m02778 - - 4e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.25 24.1 0.96 Os11g0610000 9639.m03616 - - 2e-1 At2g29490 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) O.I. H.G. S.X.
0.24 22.4 0.97 Os08g0193400 9636.m00894 - - 4e-2 At3g17160 unknown protein O.I. H.G. S.X.
0.24 22.4 0.97 Os10g0429400 9638.m02508 - MATH domain containing protein 2e+0 At1g68500 unknown protein O.I. H.G. S.X.
0.22 19.4 0.97 Os09g0331000 9637.m01351 - - 2e-1 At3g59370 unknown protein O.I. H.G. S.X.
0.21 17.9 0.97 Os01g0975400 NM_189494.1 - - 7e+0 At2g38695 unknown protein O.I. H.G. S.X.
0.19 15.1 0.94 Os01g0351700 NM_184037.1 - - 9e+0 At3g22120 CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.89	Os06g0361700	9634.m02538	-	-	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os11g0664100	9639.m04092	-	Protein kinase domain containing protein	3e-1	At4g02235	AGL51	O.I.	H.G.	S.X.
0.48	63.7	0.92	Os04g0248300	9632.m01585	-	-	3e+0	At1g02740	chromatin binding	O.I.	H.G.	S.X.
0.48	63.7	0.93	Os07g0651000	9635.m04586	-	-	1e+0	At2g12875	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os10g0451500	9638.m02710	-	-	5e-4	At1g62240	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os09g0385800	9637.m01877	-	Conserved hypothetical protein	4e-1	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	O.I.	H.G.	S.X.
0.39	48.3	0.92	Os10g0454000	AK106252.1	-	-	1e-5	At1g19300	PARVUS (PARVUS)	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os04g0298400	9632.m02152	-	-	7e-2	At2g23120	-	O.I.	H.G.	S.X.
0.38	46.9	0.94	Os08g0370000	9636.m02796	-	-	2e-1	At5g54410	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.91	Os10g0364200	NM_196057.1	-	-	8e-1	At3g56970	BHLH038	O.I.	H.G.	S.X.
0.35	41.7	0.96	Os07g0275600	9635.m01751	-	-	2e+1	At5g65390	AGP7	O.I.	H.G.	S.X.
0.35	41.7	0.93	Os08g0205500	9636.m01009	-	-	3e-1	At1g73560	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os09g0517900	BM038469	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e+1	At3g54770	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os10g0535101	NM_188873.1	-	-	5e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os07g0131800	NM_186229.1	-	-	8e-3	At4g10970	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.90	Os04g0290100	9632.m02057	-	-	2e+0	At5g16870	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.
0.29	31.1	0.92	Os09g0373600	9637.m01774	-	-	3e-1	At5g57150	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.28	31.1	0.92	Os03g0605666	9631.m03929	-	-	5e-1	At1g35181	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.91	Os02g0586701	9631.m02778	-	-	4e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os11g0610000	9639.m03616	-	-	2e-1	At2g29490	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	O.I.	H.G.	S.X.
0.24	22.4	0.97	Os08g0193400	9636.m00894	-	-	4e-2	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	0.97	Os10g0429400	9638.m02508	-	MATH domain containing protein	2e+0	At1g68500	unknown protein	O.I.	H.G.	S.X.
0.22	19.4	0.97	Os09g0331000	9637.m01351	-	-	2e-1	At3g59370	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.97	Os01g0975400	NM_189494.1	-	-	7e+0	At2g38695	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.94	Os01g0351700	NM_184037.1	-	-	9e+0	At3g22120	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.8 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.5 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
47.9	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
32.8	99.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
23.5	99.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.3	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os06g0361700
Gene name
Homology with Arabidopsis	Similar to At1g56530: hydroxyproline-rich glycoprotein family protein (HF=2e-1)
Module size	25 genes
NF	0.35
%ile	39.4

Co-expression analysis

Gene ID Os06g0361700 Gene name Homology with ArabidopsisSimilar to At1g56530: hydroxyproline-rich glycoprotein family protein (HF=2e-1) Module size 25 genes NF 0.35 %ile 39.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0361700

Gene name
Homology with Arabidopsis Similar to At1g56530: hydroxyproline-rich glycoprotein family protein (HF=2e-1)

Module size 25 genes

NF 0.35

%ile 39.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays