Co-expression analysis

Gene ID	Os06g0347700
Gene name
Homology with Arabidopsis	Similar to At4g37940: AGL21 (HF=5e-4)
Module size	7 genes
NF	0.06
%ile	4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.1	0.86	Os06g0347700	9634.m02365	-	-	5e-4	At4g37940	AGL21	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	0.93	Os04g0491500	AK101116.1	-	TGF-beta receptor, type I/II extracellular regionfamily protein	2e-2	At4g21680	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	0.94	Os05g0466100	AK108647.1	-	CCT domain containing protein	7e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	0.93	Os08g0332600	9636.m02387	-	Disease resistance protein family protein	1e+0	At5g25600	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2.5	0.94	Os08g0401100	AK121508.1	-	Ankyrin repeat containing protein	5e+0	At3g31401	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	0.94	Os08g0151300	AK111808.1	-	Myb, DNA-binding domain containing protein	2e-20	At1g63910	AtMYB103 (myb domain protein 103)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	0.94	Os03g0282100	9631.m01705	-	-	3e-1	At3g55090	ATPase, coupled to transmembrane movement of substances	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
44.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
30.4	99.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
27.3	99.6	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
12.1	98.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.1	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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