CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0320200

Gene name
Homology with Arabidopsis Similar to At3g09260: PYK10 (HF=2e-4)

Module size 12 genes

NF 0.08

%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.51 68.7 0.88 Os06g0320200 9634.m02112 - Beta-primeverosidase (EC 3.2.1.149) 2e-4 At3g09260 PYK10 O.I. H.G. S.X.
0.29 31.1 0.91 Os04g0160600 9632.m00696 - - 2e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) O.I. H.G. S.X.
0.25 24.1 0.95 Os05g0565100 AK063277.1 - Cytochrome b561 / ferric reductase transmembranedomain containing protein 4e-2 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) O.I. H.G. S.X.
0.22 19.4 0.92 Os10g0483400 AK120835.1 - Protein kinase domain containing protein 7e-5 At2g47060 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.18 13.7 0.94 Os01g0923200 AK060288.1 - Conserved hypothetical protein 1e-9 At3g01940 unknown protein O.I. H.G. S.X.
0.17 12.6 0.92 Os06g0160600 NM_185619.1 - Plant protein of unknown function family protein 3e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.09 4.9 0.92 Os12g0414500 AK110880.1 - contains InterPro domain(s): IPR004364, IPR008994 3e-1 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) O.I. H.G. S.X.
0.06 3.0 0.94 Os02g0761100 AK070404.1 - Cyclophilin-40 (Expressed protein) 2e-29 At2g15790 SQN (SQUINT) O.I. H.G. S.X.
0.05 2.5 0.94 Os03g0306400 AY183658.1 - Mitochondrial ATP-dependent protease Lon precursor 2e-15 At5g26860 LON1 (LON PROTEASE 1) O.I. H.G. S.X.
0.04 2.0 0.92 Os07g0471900 9635.m02810 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At3g63350 AT-HSFA7B O.I. H.G. S.X.
0.04 2.0 0.93 Os04g0566300 AK062357.1 - Hypothetical protein 4e+0 At5g52690 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.02 1.0 0.92 Os04g0674500 AK120940.1 - Hypothetical protein 2e-2 At3g52910 AtGRF4 (GROWTH-REGULATING FACTOR 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.9 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.023 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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