CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0314600

Gene name
Homology with Arabidopsis Similar to At1g15125: S-adenosylmethionine-dependent methyltransferase/ methyltransferase (HF=2e-1)

Module size 11 genes

NF 0.45

%ile 56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 0.85 Os06g0314600 AK067321.1 - Floral nectary-specific protein 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase O.I. H.G. S.X.
0.59 78.0 0.89 Os09g0125900 AK065634.1 - ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 3 6e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.54 71.9 0.87 Os05g0267100 AK065555.1 - Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein 3e+0 At3g11490 rac GTPase activating protein, putative O.I. H.G. S.X.
0.50 68.0 0.88 Os10g0110800 AK070621.1 - Nitrate transporter (Fragment) 3e-1 At1g62200 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os05g0232200 AK071646.1 - Conserved hypothetical protein 3e+0 At5g15190 unknown protein O.I. H.G. S.X.
0.42 53.9 0.89 Os05g0488600 9633.m03832 - Myb, DNA-binding domain containing protein 2e-25 At3g04030 myb family transcription factor O.I. H.G. S.X.
0.38 46.9 0.91 Os10g0572100 AK073002.1 - Protein of unknown function UPF0005 family protein 3e-4 At5g46610 unknown protein O.I. H.G. S.X.
0.35 41.7 0.89 Os10g0356366 CR288737 - - 3e-30 Atcg00510 - O.I. H.G. S.X.
0.33 38.8 0.89 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) O.I. H.G. S.X.
0.30 32.7 0.87 Os01g0150900 AK058767.1 - Hypothetical protein 9e-1 At1g07060 unknown protein O.I. H.G. S.X.
0.25 24.1 0.90 Os08g0474500 AK111147.1 - Conserved hypothetical protein 5e-1 At2g17870 cold-shock DNA-binding family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.8 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.031 1 GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage