CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0302000

Gene name
Homology with Arabidopsis Similar to At1g06475: unknown protein (HF=3e+0)

Module size 11 genes

NF 0.62

%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.76 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein O.I. H.G. S.X.
0.95 99.6 0.82 Os11g0306400 AK106179.1 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.67 87.2 0.84 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein O.I. H.G. S.X.
0.62 81.5 0.83 Os03g0306700 AK109929.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.
0.61 81.2 0.82 Os11g0307300 9639.m01888 - Herbicide safener binding protein 6e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.55 73.7 0.83 Os08g0297800 AK058698.1 - Sulfotransferase family protein 7e-4 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) O.I. H.G. S.X.
0.53 71.3 0.86 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.52 69.6 0.84 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.50 68.0 0.82 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein O.I. H.G. S.X.
0.48 63.7 0.85 Os06g0500700 9634.m02934 - Cytochrome P450 family protein 1e-2 At3g26300 CYP71B34 O.I. H.G. S.X.
0.39 48.3 0.84 Os01g0937200 AK121597.1 - Peptidase aspartic family protein 2e-1 At3g57785 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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