CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0300800

Gene name
Homology with Arabidopsis Similar to At3g13290: VCR (VARICOSE-RELATED) (HF=2e-6)

Module size 6 genes

NF 0.60

%ile 81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.97 Os06g0300800 AK111728.1 - The start codon is not identified. 2e-6 At3g13290 VCR (VARICOSE-RELATED) O.I. H.G. S.X.
0.73 91.1 0.97 Os06g0105900 AK062140.1 - Conserved hypothetical protein 1e-4 At4g01290 unknown protein O.I. H.G. S.X.
0.63 82.7 0.97 Os08g0109500 AK120789.1 - Bromodomain containing protein 2e-5 At1g58025 DNA binding O.I. H.G. S.X.
0.56 76.3 0.97 Os11g0157100 AK120409.1 - Cyclin domain containing protein 4e-22 At4g19600 CYCT1 O.I. H.G. S.X.
0.55 73.7 0.97 Os03g0794800 AK058269.1 - XRN3 2e-25 At1g54490 XRN4 (EXORIBONUCLEASE 4) O.I. H.G. S.X.
0.40 51.1 0.97 Os03g0165600 AK062304.1 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 3e-1 At3g47890 ubiquitin thiolesterase/ zinc ion binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 98.2 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
7.7 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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