CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0300300

Gene name
Homology with Arabidopsis Similar to At4g26550: - (HF=2e-3)

Module size 6 genes

NF 0.42

%ile 52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.94 Os06g0300300 AK068813.1 - Conserved hypothetical protein 2e-3 At4g26550 - O.I. H.G. S.X.
0.50 68.0 0.94 Os04g0600400 AK072894.1 - Conserved hypothetical protein 6e-1 At2g35470 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os06g0608600 AK061418.1 - Conserved hypothetical protein 9e-3 At5g56020 - O.I. H.G. S.X.
0.44 58.1 0.94 Os06g0238900 AK106064.1 - Protein of unknown function DUF716 family protein 2e-1 At3g45980 HTB9 O.I. H.G. S.X.
0.25 24.1 0.94 Os05g0279600 AK070566.1 - Conserved hypothetical protein 3e-9 At4g30900 - O.I. H.G. S.X.
0.18 13.7 0.94 Os08g0499200 AK120828.1 - Cl- channel, voltage gated family protein 1e-65 At1g55620 CLC-F (CHLORIDE CHANNEL F) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.9 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.9 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.9 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.167 1 GO:0006821 The directed movement of chloride into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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