CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0299300

Gene name
Homology with Arabidopsis Similar to At3g49580: LSU1 (RESPONSE TO LOW SULFUR 1) (HF=2e+0)

Module size 7 genes

NF 0.29

%ile 30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.82 Os06g0299300 AK060501.1 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At3g49580 LSU1 (RESPONSE TO LOW SULFUR 1) O.I. H.G. S.X.
0.38 46.9 0.88 Os07g0159700 9635.m00597 - Protein kinase domain containing protein 3e-2 At3g17420 GPK1 O.I. H.G. S.X.
0.33 38.8 0.88 Os03g0310000 AK060625.1 - Lipolytic enzyme, G-D-S-L family protein 5e-11 At5g18430 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.29 31.1 0.88 Os05g0454200 AK101945.1 - Protein of unknown function DUF315 domaincontaining protein 1e-15 At4g38430 ROPGEF1 O.I. H.G. S.X.
0.24 22.4 0.86 Os04g0677200 AK107505.1 - Leucine-rich repeat, plant specific containingprotein 5e-2 At3g12610 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) O.I. H.G. S.X.
0.22 19.4 0.88 Os10g0508000 9638.m03238 - Multicopper oxidase, type 1 family protein 2e-4 At3g13400 sks13 (SKU5 Similar 13) O.I. H.G. S.X.
0.17 12.6 0.84 Os12g0274200 AK063071.1 - Lipolytic enzyme, G-D-S-L family protein 8e-6 At1g71691 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.6 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
54.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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