CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0296700

Gene name
Homology with Arabidopsis Similar to At4g13150: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.34

%ile 38.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.91 Os06g0296700 AK065533.1 - Hypothetical protein 1e+0 At4g13150 unknown protein O.I. H.G. S.X.
0.50 68.0 0.92 Os10g0439200 9638.m02604 - Alpha-expansin OsEXPA25 1e-4 At2g37640 EXP3 O.I. H.G. S.X.
0.50 68.0 0.93 Os01g0937600 AK064091.1 - Peptidase aspartic family protein 1e+1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.
0.27 27.5 0.91 Os12g0431300 AK110931.1 - Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein 3e-1 At1g49110 unknown protein O.I. H.G. S.X.
0.26 25.6 0.90 Os01g0533900 AK101194.1 - Multidrug resistance protein 1 homolog 4e-4 At4g18050 PGP9 (P-GLYCOPROTEIN 9) O.I. H.G. S.X.
0.19 15.1 0.91 Os11g0265800 9639.m01486 - 2OG-Fe(II) oxygenase domain containing protein 3e+0 At1g50320 ATHX O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.3 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.5 99.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.217959.1.S1_at, orthologous to the query gene, Os06g0296700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 PtpAffx.217959.1.S1_at At4g13150 hypothetical protein - 2e+0 At1g30515 unknown protein O.I. H.G. S.X.
0.14 23.5 PtpAffx.213164.1.S1_at At4g13150 ABC transporter family protein - 2e-1 At5g47520 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) O.I. H.G. S.X.
0.07 11.6 PtpAffx.204911.1.S1_at At4g13150 hypothetical protein - 2e+0 At5g25415 unknown protein O.I. H.G. S.X.
0.07 11.6 PtpAffx.200174.1.S1_at At4g13150 hypothetical protein - 3e-1 At3g52550 - O.I. H.G. S.X.
0.03 5.2 PtpAffx.210922.1.S1_at At4g13150 hypothetical protein - 3e-2 At3g30720 QQS (QUA-QUINE STARCH) O.I. H.G. S.X.
0.02 3.6 Ptp.1444.1.A1_at At4g13150 - - 8e-2 At1g31350 F-box family protein O.I. H.G. S.X.
0.01 2.2 PtpAffx.217611.1.S1_at At4g13150 hypothetical protein - 2e+1 At5g17170 ENH1 (enhancer of sos3-1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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