Co-expression analysis

Gene ID Os06g0296700
Gene name
Homology with ArabidopsisSimilar to At4g13150: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.34
%ile 38.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.10.91Os06g0296700AK065533.1-Hypothetical protein1e+0At4g13150unknown proteinO.I.H.G.S.X.
0.5068.00.92Os10g04392009638.m02604-Alpha-expansin OsEXPA251e-4At2g37640EXP3O.I.H.G.S.X.
0.5068.00.93Os01g0937600AK064091.1-Peptidase aspartic family protein1e+1At5g44500small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeO.I.H.G.S.X.
0.2727.50.91Os12g0431300AK110931.1-Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein3e-1At1g49110unknown proteinO.I.H.G.S.X.
0.2625.60.90Os01g0533900AK101194.1-Multidrug resistance protein 1 homolog4e-4At4g18050PGP9 (P-GLYCOPROTEIN 9)O.I.H.G.S.X.
0.1915.10.91Os11g02658009639.m01486-2OG-Fe(II) oxygenase domain containing protein3e+0At1g50320ATHXO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.099.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.399.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.499.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.399.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.999.0GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.599.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.499.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.798.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.698.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.198.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig24322_at, orthologous to the query gene, Os06g0296700

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1Contig24322_atAt4g13150--5e+0At2g04425LCR82 (Low-molecular-weight cysteine-rich 82)O.I.H.G.S.X.
0.5572.0Contig7588_atAt4g13150--5e-1At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.4458.9Contig13555_atAt4g13150--4e-1Atmg01290-O.I.H.G.S.X.
0.4053.1Contig8833_atAt4g13150--2e+0At1g63855unknown proteinO.I.H.G.S.X.
0.3342.6Contig15509_atAt4g13150--2e-3At1g10522unknown proteinO.I.H.G.S.X.
0.3037.0Contig23686_atAt4g13150--4e+0At2g10014unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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