CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0295600

Gene name
Homology with Arabidopsis Similar to At4g27310: zinc finger (B-box type) family protein (HF=9e-2)

Module size 11 genes

NF 0.53

%ile 71.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.98 Os06g0295600 9634.m01851 - - 9e-2 At4g27310 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.67 87.2 0.99 Os10g0373800 NM_196137.1 - - 2e+0 At5g14100 ATNAP14 O.I. H.G. S.X.
0.64 83.4 0.99 Os03g0249600 9631.m01397 - - 2e-1 At4g24150 AtGRF8 (GROWTH-REGULATING FACTOR 8) O.I. H.G. S.X.
0.55 73.7 0.99 Os02g0793400 AK109835.1 - - 7e-1 At4g16240 unknown protein O.I. H.G. S.X.
0.54 71.9 0.99 Os01g0523100 NM_193678.1 - - 1e-1 At1g29720 protein kinase family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0856066 9629.m06304 - - 8e+0 At4g10465 metal ion binding O.I. H.G. S.X.
0.48 63.7 0.99 Os08g0314433 9633.m01624 - - 1e+1 At5g12360 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os03g0325000 9631.m02079 - Pyruvate kinase family protein 3e-31 At5g56350 pyruvate kinase, putative O.I. H.G. S.X.
0.42 53.9 0.99 Os02g0125500 9630.m00232 - - 7e-1 At2g15830 unknown protein O.I. H.G. S.X.
0.40 51.1 0.99 Os12g0479300 AK109886.1 - HcrVf1 protein 3e-1 At2g32480 membrane-associated zinc metalloprotease, putative O.I. H.G. S.X.
0.37 45.0 0.99 Os01g0339600 AK106772.1 - Conserved hypothetical protein 2e-2 At2g21780 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.9 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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