Co-expression analysis

Gene ID	Os06g0280900
Gene name
Homology with Arabidopsis	Similar to At1g19960: - (HF=2e+0)
Module size	6 genes
NF	0.66
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.6	0.92	Os06g0280900	AK061934.1	-	Conserved hypothetical protein	2e+0	At1g19960	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.93	Os09g0498700	AK074021.1	-	Hypothetical protein	9e-1	At3g09540	pectate lyase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.93	Os08g0528700	AK102859.1	-	Mitochodrial transcription terminationfactor-related family protein	2e-2	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.93	Os02g0467400	AK121931.1	-	Conserved hypothetical protein	2e+0	At2g17705	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.92	Os11g0596200	CB638585	-	TPR-like domain containing protein	1e+0	At4g31970	CYP82C2	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.92	Os12g0405300	AK070969.1	-	Hypothetical protein	4e+0	At5g27840	TOPP8	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.4	99.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.2	99.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.0	98.7	GSM302915	emb6D_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
15.1	98.6	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM195224	Suspension cell	GSE7951	Genome-wide gene expression profiling of rice stigma
9.5	97.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage