CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0277500

Gene name
Homology with Arabidopsis Similar to At3g59060: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) (HF=6e-3)

Module size 6 genes

NF 0.13

%ile 10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os06g0277500 NM_196635.1 - - 6e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) O.I. H.G. S.X.
0.23 21.2 0.98 Os06g0645600 9634.m04231 - Conserved hypothetical protein 3e+0 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.15 10.3 0.98 Os02g0738300 AK108113.1 - Conserved hypothetical protein 1e-1 At4g14695 unknown protein O.I. H.G. S.X.
0.07 3.7 0.98 Os03g0388950 9633.m02831 - - 2e-2 At1g58150 unknown protein O.I. H.G. S.X.
0.07 3.7 0.98 Os03g0636200 9631.m04195 - - 2e+0 At1g29060 - O.I. H.G. S.X.
0.07 3.7 0.98 Os01g0609800 NM_192729.1 - - 2e-2 At1g58150 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.6 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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