CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0275750

Gene name
Homology with Arabidopsis Similar to At2g27580: zinc finger (AN1-like) family protein (HF=1e-1)

Module size 7 genes

NF 0.58

%ile 78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.98 Os06g0275750 NM_185804.1 - - 1e-1 At2g27580 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.63 82.7 0.98 Os03g0638100 9631.m04211 - - 3e+0 At2g22470 AGP2 (ARABINOGALACTAN PROTEIN 2) O.I. H.G. S.X.
0.59 78.0 0.98 Os09g0481650 9637.m02714 - - 3e-1 At1g44830 AP2 domain-containing transcription factor TINY, putative O.I. H.G. S.X.
0.59 78.0 0.98 Os03g0622400 9631.m04085 - Conserved hypothetical protein 4e+0 At5g05370 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative O.I. H.G. S.X.
0.55 73.7 0.99 Os12g0639900 9640.m04362 - - 2e-1 At1g52827 unknown protein O.I. H.G. S.X.
0.44 58.1 0.99 Os12g0115833 9640.m00142 - - 1e+1 At5g11280 unknown protein O.I. H.G. S.X.
0.40 51.1 0.98 Os07g0632100 9635.m04398 - - 5e+0 At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.5 99.1 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
16.0 98.7 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
14.8 98.6 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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