CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0270900

Gene name
Homology with Arabidopsis Similar to At1g23800: ALDH2B7 (HF=1e-53)

Module size 6 genes

NF 0.61

%ile 83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os06g0270900 AF162665.1 - RF2 (EC 1.2.1.3) (T cytoplasm male sterilityrestorer factor 2) 1e-53 At1g23800 ALDH2B7 O.I. H.G. S.X.
0.83 95.8 0.95 Os09g0442300 CB666183 - Oryzain gamma chain precursor (EC 3.4.22.-) 4e-30 At5g60360 AALP (Arabidopsis aleurain-like protease) O.I. H.G. S.X.
0.80 94.6 0.95 Os07g0479300 D17587.1 - Serine carboxypeptidase-like (EC 3.4.16.-)(Fragment) 4e-6 At3g10410 scpl49 (serine carboxypeptidase-like 49) O.I. H.G. S.X.
0.67 87.2 0.95 Os03g0307100 AK102205.1 - TolB, C-terminal domain containing protein 7e-37 At2g47390 serine-type endopeptidase/ serine-type peptidase O.I. H.G. S.X.
0.61 81.2 0.95 Os05g0310500 AK101093.1 - Cathepsin B (Fragment) 1e-33 At1g02300 cathepsin B-like cysteine protease, putative O.I. H.G. S.X.
0.28 31.1 0.95 Os02g0469600 AK119670.1 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 7e-11 At4g16190 cysteine proteinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.2 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.1 97.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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