CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0247000

Gene name
Homology with Arabidopsis Similar to At3g50760: GATL2 (Galacturonosyltransferase-like 2) (HF=1e-2)

Module size 6 genes

NF 0.08

%ile 6.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.85 Os06g0247000 9634.m01370 - Avr9/Cf-9 rapidly elicited protein 231 1e-2 At3g50760 GATL2 (Galacturonosyltransferase-like 2) O.I. H.G. S.X.
0.67 87.2 0.89 Os08g0502400 AK106964.1 - Beta-Ig-H3/fasciclin domain containing protein 3e-2 At2g04780 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) O.I. H.G. S.X.
0.40 51.1 0.89 Os10g0562700 AF268596.3 - Protein of unknown function DUF632 domaincontaining protein 2e-11 At1g02110 proline-rich family protein O.I. H.G. S.X.
0.16 11.3 0.90 Os09g0249400 AK063577.1 - Protein of unknown function DUF588 family protein 6e-3 At4g11300 unknown protein O.I. H.G. S.X.
0.07 3.7 0.90 Os01g0841100 AK121828.1 - Beta-Ig-H3/fasciclin domain containing protein 1e-7 At3g46550 SOS5 (salt overly sensitive 5) O.I. H.G. S.X.
0.02 1.0 0.90 Os06g0712500 AK068531.1 - Glycosyl transferase, family 8 protein 2e-24 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.4 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.5 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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