CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0239100

Gene name
Homology with Arabidopsis Similar to At2g45040: matrix metalloproteinase (HF=2e-3)

Module size 6 genes

NF 0.57

%ile 77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.83 Os06g0239100 9634.m01307 - Peptidase M10A and M12B, matrixin and adamalysinfamily protein 2e-3 At2g45040 matrix metalloproteinase O.I. H.G. S.X.
0.91 98.9 0.85 Os12g0603800 AB060552.1 - Calmodulin NtCaM13 1e-4 At1g66410 CAM4 (calmodulin 4) O.I. H.G. S.X.
0.83 95.8 0.84 Os10g0478300 AK109011.1 - Myb, DNA-binding domain containing protein 7e-10 At4g38620 MYB4 O.I. H.G. S.X.
0.80 94.6 0.88 Os09g0401000 AK064679.1 - Myb-related protein Pp2 1e-8 At4g38620 MYB4 O.I. H.G. S.X.
0.73 91.1 0.85 Os01g0179000 9629.m00776 - Transferase family protein 3e+0 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.17 12.6 0.83 Os01g0609900 AK121722.1 - PDR-like ABC transporter (PDR4 ABC transporter) 8e-22 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.0 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage