CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0219300

Gene name
Homology with Arabidopsis Similar to At5g03550: - (HF=5e+0)

Module size 7 genes

NF 0.17

%ile 15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.97 Os06g0219300 9634.m01132 - - 5e+0 At5g03550 - O.I. H.G. S.X.
0.21 17.9 0.98 Os11g0431200 9639.m02145 - - 3e-1 At2g05915 unknown protein O.I. H.G. S.X.
0.14 9.3 0.98 Os10g0433800 NM_196640.1 - - 1e+0 At2g44690 ARAC9 O.I. H.G. S.X.
0.13 8.2 0.98 Os03g0410100 9631.m02889 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 2e-4 At4g00690 ULP1B (UB-LIKE PROTEASE 1B) O.I. H.G. S.X.
0.12 7.2 0.97 Os08g0376800 9636.m02863 - - 7e+0 At5g03200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.12 7.2 0.97 Os04g0672700 AK102863.1 - Protein prenyltransferase domain containingprotein 2e+0 At5g64130 - O.I. H.G. S.X.
0.10 5.7 0.98 Os04g0483800 9632.m03874 - - 3e+0 At5g12323 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.5 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.3 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.2 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.9 99.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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