Co-expression analysis

Gene ID	Os06g0217900
Gene name
Homology with Arabidopsis	Similar to At4g14520: DNA-directed RNA polymerase II-related (HF=8e-1)
Module size	6 genes
NF	0.45
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.2	0.91	Os06g0217900	AK103765.1	-	Cyclin, C-terminal domain containing protein	8e-1	At4g14520	DNA-directed RNA polymerase II-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.92	Os01g0914400	AK063138.1	-	Conserved hypothetical protein	6e-3	At4g12970	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.93	Os04g0525700	AK105830.1	-	Peptidase S10, serine carboxypeptidase familyprotein	2e-1	At5g23210	SCPL34	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	0.92	Os03g0320800	AK103265.1	-	Protein kinase domain containing protein	3e-2	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.93	Os02g0756100	AK060615.1	-	Conserved hypothetical protein	2e+0	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	0.91	Os09g0557900	AK107999.1	-	Plastocyanin-like domain containing protein	3e+0	At2g41600	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	98.4	GSM100446	Rice Bala 1ppm Arsenate Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.7	98.2	GSM149410	Rice Azucena 1ppm Arsenate Rep3	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.0	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.8	97.8	GSM100445	Rice Bala 1ppm Arsenate Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.7	97.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM100442	Rice Azucena 1ppm Arsenate Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.8	97.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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