CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0217300

Gene name
Homology with Arabidopsis Similar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=6e-3)

Module size 9 genes

NF 0.27

%ile 26.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.72 Os06g0217300 AY345223.2 - Transcription factor MADS55 6e-3 At2g22540 SVP (SHORT VEGETATIVE PHASE) O.I. H.G. S.X.
0.40 51.1 0.78 Os12g0123500 AK072692.1 - Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase)(Adenosine diphosphatase) (ADPase)(ATP-diphosphohydrolase) 2e-4 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.40 51.1 0.89 Os11g0150400 AK058243.1 - Conserved hypothetical protein 4e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.32 36.3 0.82 Os06g0119100 AK065857.1 - Protein of unknown function DUF594 family protein 3e-1 At4g12050 DNA-binding protein-related O.I. H.G. S.X.
0.27 27.5 0.90 Os11g0456000 AK121173.1 - Rapid ALkalinization Factor family protein 5e-3 At1g58420 - O.I. H.G. S.X.
0.25 24.1 0.90 Os03g0134900 AK102889.1 - Glutathione S-transferase GSTF14 (Fragment) 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) O.I. H.G. S.X.
0.17 12.6 0.84 Os09g0520500 AK107978.1 - Hypothetical protein 2e-2 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) O.I. H.G. S.X.
0.15 10.3 0.89 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) O.I. H.G. S.X.
0.15 10.3 0.82 Os10g0159600 AK064267.1 - Heat shock protein Hsp20 domain containing protein 3e+0 At2g03680 SPR1 (SPIRAL1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.5 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.5 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.8 97.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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