CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0192300

Gene name
Homology with Arabidopsis Similar to At1g64340: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.78 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein O.I. H.G. S.X.
0.83 95.8 0.78 Os08g0423500 BQ908858 - Carbonic anhydrase, eukaryotic family protein 1e+0 At5g05270 chalcone-flavanone isomerase family protein O.I. H.G. S.X.
0.67 87.2 0.76 Os05g0365600 CB096565 - Hydroxyisourate hydrolase 2e+0 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) O.I. H.G. S.X.
0.60 79.7 0.76 Os01g0762300 CA763331 - Conserved hypothetical protein 6e-9 At5g55570 unknown protein O.I. H.G. S.X.
0.60 79.7 0.78 Os08g0351200 CB677679 - Plant protein of unknown function family protein 1e+1 At4g09490 RNase H domain-containing protein O.I. H.G. S.X.
0.46 60.9 0.73 Os06g0355900 9636.m00080 - - 1e-1 At3g42310 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.8 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.133 1 GO:0006730 The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage