CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0186700

Gene name
Homology with Arabidopsis Similar to At1g79710: integral membrane transporter family protein (HF=7e-2)

Module size 8 genes

NF 0.69

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.95 Os06g0186700 AK073039.1 - Biopterin transport-related protein BT1 familyprotein 7e-2 At1g79710 integral membrane transporter family protein O.I. H.G. S.X.
0.71 89.6 0.96 Os07g0695900 AK071940.1 - Myb, DNA-binding domain containing protein 5e-2 At1g75390 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) O.I. H.G. S.X.
0.67 87.2 0.96 Os06g0181400 9634.m00766 - Conserved hypothetical protein 3e+0 At4g30830 unknown protein O.I. H.G. S.X.
0.67 87.2 0.96 Os08g0322600 AK069839.1 - UbiA prenyltransferase family protein 1e-9 At4g23660 AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1) O.I. H.G. S.X.
0.67 87.2 0.97 Os07g0249100 AK066742.1 - Protein prenyltransferase domain containingprotein 5e-7 At3g06920 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.63 82.7 0.96 Os12g0610500 AK106471.1 - SAM (and some other nucleotide) binding motifdomain containing protein 2e-11 At1g16650 unknown protein O.I. H.G. S.X.
0.63 82.7 0.96 Os04g0690400 AK102981.1 - Hypothetical protein 3e-2 At1g49010 myb family transcription factor O.I. H.G. S.X.
0.57 77.0 0.96 Os11g0456200 AK060974.1 - - 2e+0 At4g36900 RAP2.10 (related to AP2 10) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.7 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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