CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0185400

Gene name
Homology with Arabidopsis Similar to At5g62065: lipid binding (HF=4e-1)

Module size 11 genes

NF 0.32

%ile 34.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.81 Os06g0185400 AK107760.1 - Hypothetical protein 4e-1 At5g62065 lipid binding O.I. H.G. S.X.
0.59 78.0 0.89 Os09g0101100 AK120565.1 - - 5e-1 At3g07425 unknown protein O.I. H.G. S.X.
0.50 68.0 0.88 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 O.I. H.G. S.X.
0.47 62.3 0.90 Os01g0621300 NM_192847.1 - Conserved hypothetical protein 8e-2 At4g11740 SAY1 O.I. H.G. S.X.
0.46 60.9 0.86 Os08g0543100 9636.m04377 - Disease resistance protein family protein 1e-1 At2g07340 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.40 51.1 0.88 Os09g0436300 AK103151.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 8e-1 At5g22610 F-box family protein O.I. H.G. S.X.
0.29 31.1 0.92 Os01g0764700 AK071863.1 - Holliday junction resolvase YqgF family protein 1e+1 At5g05410 DREB2A O.I. H.G. S.X.
0.23 21.2 0.87 Os01g0103100 AK058723.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-2 At5g13400 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.23 21.2 0.89 Os07g0563000 NM_185813.1 - Diacylglycerol kinase, catalytic region domaincontaining protein 1e-9 At4g21540 SPHK1 (SPHINGOSINE KINASE 1) O.I. H.G. S.X.
0.18 13.7 0.88 Os01g0366300 AK064115.1 - ARK3 product/receptor-like serine/threonineprotein kinase ARK3 2e-8 At3g16030 CES101 (CALLUS EXPRESSION OF RBCS 101) O.I. H.G. S.X.
0.13 8.2 0.86 Os06g0346400 AK105492.1 - Conserved hypothetical protein 9e-1 At1g22520 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.0 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.9 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006139 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
0.095 1 GO:0007205 The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
0.031 1 GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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