CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0181900

Gene name
Homology with Arabidopsis Similar to At1g27110: binding (HF=7e-2)

Module size 7 genes

NF 0.46

%ile 59.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.99 Os06g0181900 AK111463.1 - Hypothetical protein 7e-2 At1g27110 binding O.I. H.G. S.X.
0.55 73.7 0.99 Os11g0294000 9639.m01752 - - 2e+0 At3g01260 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase O.I. H.G. S.X.
0.55 73.7 0.99 Os01g0645100 NM_192311.1 - - 1e+0 At4g24974 - O.I. H.G. S.X.
0.53 71.3 0.99 Os10g0182800 NM_195190.1 - - 2e+0 At5g38160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0513300 9630.m02967 - - 3e+0 At5g65165 SDH2-3 O.I. H.G. S.X.
0.33 38.8 0.99 Os01g0328832 NM_183839.1 - - 1e+0 At3g60090 VQ motif-containing protein O.I. H.G. S.X.
0.26 25.6 0.99 Os01g0273200 NM_188076.1 - - 5e-3 At5g38700 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
12.4 98.3 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
11.3 98.2 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
10.9 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.0 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage