CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0181700

Gene name
Homology with Arabidopsis Similar to At5g25190: ethylene-responsive element-binding protein, putative (HF=1e-13)

Module size 6 genes

NF 0.35

%ile 40.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.95 Os06g0181700 AK108355.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-13 At5g25190 ethylene-responsive element-binding protein, putative O.I. H.G. S.X.
0.50 68.0 0.97 Os11g0247500 AK110848.1 - Hypothetical protein 1e+0 At4g14805 protease inhibitor/seed storage/lipid transfer protein (LTP)-related O.I. H.G. S.X.
0.38 46.9 0.96 Os10g0117800 AK119385.1 - Guanine nucleotide binding protein (G-protein),alpha subunit family protein 2e-12 At1g31930 XLG3 (extra-large GTP-binding protein 3) O.I. H.G. S.X.
0.36 44.0 0.97 Os05g0169800 9633.m00693 - Protein of unknown function DUF239 domaincontaining protein 2e-6 At5g50150 unknown protein O.I. H.G. S.X.
0.25 24.1 0.97 Os04g0479000 AK106344.1 - HPV16 E1 protein binding protein (Thyroid hormonereceptor interactor 13) (TRIP13 protein) 8e-32 At4g24710 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.19 15.1 0.96 Os03g0216300 AK106411.1 - TPR-like domain containing protein 5e+0 At5g38200 hydrolase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
22.0 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.6 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.071 1 GO:0007186 The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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