Co-expression analysis

Gene ID Os06g0169900
Gene name
Homology with ArabidopsisSimilar to At5g14320: 30S ribosomal protein S13, chloroplast (CS13) (HF=5e-1)
Module size 6 genes
NF 0.59
%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7391.10.87Os06g0169900CB096301-Hypothetical protein5e-1At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.6787.20.87Os12g0455000AK111239.1-Conserved hypothetical protein1e+0At4g09450myb family transcription factorO.I.H.G.S.X.
0.6382.70.89Os02g0791400AK062787.1-Cytochrome oxidase c, subunit VIb family protein6e+0At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.
0.5676.30.85Os11g0428800CF291095-Plastocyanin-like domain containing protein1e+1At5g35470unknown proteinO.I.H.G.S.X.
0.5371.30.87Os07g01749009635.m00735-Plant lipid transfer protein/Par allergen familyprotein5e+0At5g26890unknown proteinO.I.H.G.S.X.
0.3644.00.87Os01g0347600NM_183998.1-Ervatamin B (EC 3.4.22.-) (ERV-B)4e-2At1g29090peptidase C1A papain family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.999.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
20.199.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.898.7GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.798.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.398.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0531GO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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