Co-expression analysis

Gene ID Os06g0168600
Gene name
Homology with ArabidopsisSimilar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=1e-96)
Module size 6 genes
NF 0.27
%ile 27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.93Os06g0168600AK068858.1-Ribonucleotide reductase1e-96At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.6079.70.94Os06g0127900AK073063.1-Ribonucleoside-diphosphate reductase small chain(EC 1.17.4.1) (Ribonucleotide reductase R2 subunit)2e-7At3g27060TSO2 (TSO meaning 'ugly' in Chinese)O.I.H.G.S.X.
0.3134.50.95Os02g0829100AB037145.1-Nucleic acid-binding OB-fold domain containingprotein3e+0At5g01390DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.2931.10.96Os06g0671800AU101589-Cellular retinaldehyde binding/alpha-tocopheroltransport family protein8e-1At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1510.30.96Os07g0105700AK063949.1-Carboxy-terminal kinesin 2 (XCTK2)9e-8At4g05190ATK5 (ARABIDOPSIS THALIANA KINESIN 5)O.I.H.G.S.X.
0.138.20.95Os04g0512400AK103203.1-BRCT domain containing protein1e+0At1g77932-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.897.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.496.8GSM159202Inflorescence (P5, 15 - 22 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
4.896.5GSM207567Mudanjiang8 wild type control rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
4.796.4GSM409428Nipponbare_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
4.696.3GSM4094309311_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
4.296.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.196.0GSM431940Shoot- -Fe-P biological rep2GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO
4.196.0GSM262000IAC165, 2 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
4.196.0GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0009186The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a glycosamine consisting of a base linked to a deoxyribose sugar esterified with diphosphate on its glycose moiety.Link to AmiGO
0.0591GO:0006260The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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