CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0155600

Gene name
Homology with Arabidopsis Similar to At3g10420: sporulation protein-related (HF=1e+0)

Module size 6 genes

NF 0.55

%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.94 Os06g0155600 AK101138.1 - Peptidase S16, lon protease family protein 1e+0 At3g10420 sporulation protein-related O.I. H.G. S.X.
0.55 73.7 0.94 Os09g0454100 AK107657.1 - Rhomboid-like protein family protein 3e+0 At2g33810 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) O.I. H.G. S.X.
0.55 73.7 0.94 Os11g0642800 AK068792.1 - Glutathione synthetase 5e-9 At5g27380 GSH2 (GLUTATHIONE SYNTHETASE 2) O.I. H.G. S.X.
0.47 62.3 0.94 Os02g0469900 AK065847.1 - HMG1/2 (high mobility group) box family protein 6e-2 At1g76110 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein O.I. H.G. S.X.
0.36 44.0 0.94 Os05g0243200 AK066379.1 - Ribosomal protein L13 1e-1 At1g49310 unknown protein O.I. H.G. S.X.
0.31 34.5 0.93 Os02g0728100 AK070290.1 - Peptidase S49, SppA 67 kDa type family protein 1e-19 At1g73990 SPPA O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.9 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0006465 The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
0.200 1 GO:0006750 The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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